Statistical Mechanics and Non-linear Dynamics Print
Written by Provata A.   
Wednesday, 06 May 2009 10:00
2006-now
  1. Kouvaris, N., Provata, A. Dissipative oscillations in spatially restricted ecosystems due to long range migration (2008) European Physical Journal B, pp. 1-10.
  2. A. Efimov, Shabunin, A., Provata, A. Synchronization of stochastic oscillations due to long-range diffusion (2008) Physical Review E - Statistical, Nonlinear, and Soft Matter Physics, 78 (5), art. no. 056201, .
  3. Provata, A., Sokolov, I.M., Spagnolo, B. Editorial: Ecological complex systems (2008) European Physical Journal B, 65 (3), pp. 307-314.
  4. Noussiou, V.K., Provata, A. Kinetic Monte Carlo simulations of the oscillatory CO oxidation at high pressures: The surface oxide model (2008) Chemical Physics, 348 (1-3), pp. 11-20.
  5. Oikonomou, Th., Provata, A., Tirnakli, U. Nonextensive statistical approach to non-coding human DNA (2008) Physica A: Statistical Mechanics and its Applications, 387 (11), pp. 2653-2659.
  6. Kouvaris, N., Provata, A. Coexistence State on Trimolecular Reactive System with Spatial Disorder. (2008) Nonlinear Phenomena in Complex Systems,11,2, 2008, pp. 259-264.
  7. Sellis, D., Provata, A., Almirantis, Y. Alu and LINE1 distributions in the human chromosomes: Evidence of global genomic organization expressed in the form of power laws (2007) Molecular Biology and Evolution, 24 (11), pp. 2385-2399.
  8. Provata, A. Non-extensive block entropy statistics of Cantor fractal sets (2007) Physica A: Statistical Mechanics and its Applications, 381 (1-2), pp. 148-154.
  9. Noussiou, V.K., Provata, A. Surface reconstruction in reactive dynamics: A kinetic Monte Carlo approach (2007) Surface Science, 601 (14), pp. 2941-2951.
  10. Provata, A., Oikonomou, Th. Power law exponents characterizing human DNA (2007) Physical Review E - Statistical, Nonlinear, and Soft Matter Physics, 75 (5), art. no. 056102, .
  11. Provata, A., Noussiou, V.K. Fractal pattern formation in the Ziff-Gulari-Barshad model (2007) Journal of Physics Condensed Matter, 19 (6), art. no. 065128, .
  12. Chichigina, O.A., Tsekouras, G.A., Provata, A. Entropy, free energy and phase transitions in the lattice Lotka-Volterra model (2006) Journal of Experimental and Theoretical Physics, 103 (4), pp. 623-631.
  13. Katsaloulis, P., Theoharis, T., Zheng, W.M., Hao, B.L., Bountis, A., Almirantis, Y., Provata, A. Long-range correlations of RNA polymerase II promoter sequences across organisms (2006) Physica A: Statistical Mechanics and its Applications, 366, pp. 308-322.
  14. Tsekouras, G.A., Provata, A. Fractal formations in the Lattice Limit Cycle model (2006) European Physical Journal B, 52 (1), pp. 107-111.
  15. Oikonomou, Th., Provata, A. Non-extensive trends in the size distribution of coding and non-coding DNA sequences in the human genome (2006) European Physical Journal B, 50 (1-2), pp. 259-264.

2001-2005
  1. Almirantis, Y., Provata, A. An evolutionary model for the origin of non-randomness, long-range order and fractality in the genome (2001) BioEssays, 23 (7), pp. 647-656.
  2. Rabias, I., Langlois, C., Provata, A., Howlin, B.J., Theodorou, D.N. Linking the atomistic scale and the mesoscale: Molecular orbital and solid state packing calculations on poly(p-phenylene) (2001) Polymer, 43 (1), pp. 185-193.
  3. Tsekouras, G.A., Provata, A. Fractal properties of the lattice Lotka-Volterra model (2002) Physical Review E - Statistical, Nonlinear, and Soft Matter Physics, 65 (1), art. no. 016204, pp. 016204/1-016204/8.
  4. Ilias, I., Vgontzas, A.N., Provata, A., Mastorakos, G. Complexity and non-linear description of diurnal cortisol and growth hormone secretory patterns before and after sleep deprivation. (2002) Endocrine regulations, 36 (2), pp. 63-72.
  5. Shabunin, A.V., Baras, F., Provata, A. Oscillatory reactive dynamics on surfaces: A lattice limit cycle model (2002) Physical Review E - Statistical, Nonlinear, and Soft Matter Physics, 66 (3), art. no. 036219, pp. 036219/1-036219/11.
  6. Provata, A., Almirantis, Y. Statistical dynamics of clustering in the genome structure (2002) Journal of Statistical Physics, 106 (1-2), pp. 23-56.
  7. Katsaloulis, P., Theoharis, T., Provata, A. Statistical distributions of oligonucleotide combinations: Applications in human chromosomes 21 and 22 (2002) Physica A: Statistical Mechanics and its Applications, 316 (1-4), pp. 380-396.
  8. Shabunin, A., Astakhov, V., Demidov, V., Provata, A., Baras, F., Nicolis, G., Anishchenko, V. Modeling chemical reactions by forced limit-cycle oscillator: Synchronization phenomena and transition to chaos (2003) Chaos, Solitons and Fractals, 15 (2), pp. 395-405.
  9. Abad, E., Provata, A., Nicolis, G. Reactive dynamics on fractal sets: Anomalous fluctuations and memory effects (2003) Europhysics Letters, 61 (5), pp. 586-592.
  10. Provata, A., Tsekouras, G.A. Spontaneous formation of dynamical patterns with fractal fronts in the cyclic lattice Lotka-Volterra model (2003) Physical Review E - Statistical, Nonlinear, and Soft Matter Physics, 67 (5 2), art. no. 056602, pp. 056602/1-056602/8.
  11. Sfyrakis, K., Provata, A., Povey, D.C., Howlin, B.J. Full-strand Minimization of Single and Double Stranded B-DNA Using Monte-Carlo Annealing (2003) Molecular Simulation, 29 (9), pp. 555-575.
  12. Tsekouras, G.A., Provata, A., Tsallis, C. Nonextensivity of the cyclic lattice Lotka-Volterra model (2004) Physical Review E - Statistical, Nonlinear, and Soft Matter Physics, 69 (1 2), art. no. 016120, pp. 161201-161207.
  13. De Decker, Y., Tsekouras, G.A., Provata, A., Emeux, Th., Nicolis, G. Propagating waves in one-dimensional discrete networks of coupled units (2004) Physical Review E - Statistical, Nonlinear, and Soft Matter Physics, 69 (3 2), art. no. 036203, pp. 036203-1-036203-8.
  14. Sfyrakis, K., Provata, A., Povey, D.C., Howlin, B.J. Local sequential minimization of double stranded B-DNA using Monte Carlo annealing (2004) Journal of Molecular Modeling, 10 (3), pp. 185-197.
  15. Kugiumtzis, D., Provata, A. Statistical analysis of gene and intergenic DNA sequences (2004) Physica A: Statistical Mechanics and its Applications, 342 (3-4), pp. 623-638.
  16. Shabunin, A.V., Efimov, A., Tsekouras, G.A., Provata, A. Scaling, cluster dynamics and complex oscillations in a multispecies Lattice Lotka-Volterra Model (2005) Physica A: Statistical Mechanics and its Applications, 347, pp. 117-136.
  17. Provata, A., Noussiou, V.K. Spatiotemporal oscillations and clustering in the Ziff-Gulari-Barshad model with surface reconstruction (2005) Physical Review E - Statistical, Nonlinear, and Soft Matter Physics, 72 (6), art. no. 066108, pp. 1-6.
  18. Katsaloulis, P., Theoharis, T., Provata, A. Statistical algorithms for long DNA sequences: Oligonucleotide distributions and homogeneity maps (2005) Scientific Programming, 13 (3), pp. 177-188.

1990-2000
  1. Takayasu, H., Provata, A., Takayasu, M. Stability and relaxation of power-law distribution (1990) Physical Review A, 42 (12), pp. 7087-7090.
  2. Bouchaud, J.-P., Georges, A., Koplik, J., Provata, A., Redner, S. Superdiffusion in random velocity fields (1990) Physical Review Letters, 64 (21), pp. 2503-2506.
  3. Takayasu, H., Takayasu, M., Provata, A., Huber, G. Statistical properties of aggregation with injection (1991) Journal of Statistical Physics, 65 (3-4), pp. 725-745.
  4. Park, H., Provata, A., Redner, S. Interface growth with competing surface currents (1991) Journal of Physics A: Mathematical and General, 24 (24), art. no. 002, pp. L1391-L1397.
  5. Provata, A., Takayasu, M., Takayasu, H. Aggregation with power-law and fractal input (1992) Physica A: Statistical Mechanics and its Applications, 189 (1-2), pp. 4-14.
  6. Provata, A., Turner, J.W., Nicolis, G. Nonlinear chemical dynamics in low dimensions: An exactly soluble model (1993) Journal of Statistical Physics, 70 (5-6), pp. 1195-1213.
  7. Provata, A., Nicolis, C. A microscopic aggregation model of droplet dynamics in warm clouds (1994) Journal of Statistical Physics, 74 (1-2), pp. 75-89.
  8. Tribet, C., Provata, A., Nicolis, G. Lattice model for polymer propagation in confined media (1994) The Journal of Chemical Physics, 100 (8), pp. 6082-6087.
  9. Gaspard, P., Nicolis, G., Provata, A., Tasaki, S. Spectral signature of the pitchfork bifurcation: Liouville equation approach (1995) Physical Review E, 51 (1), pp. 74-94.
  10. Provata, A., Takayasu, H., Takayasu, M. Long-term memory effects in closed random aggregating systems (1996) Europhysics Letters, 33 (2), pp. 99-104.
  11. Tretyakov, A.Yu., Provata, A. Percolative treatment of the restricted trimolecular reaction A + 2X ⇋ 3X (1996) Fractals, 4 (2), pp. 193-198.
  12. Almirantis, Y., Provata, A. The 'clustered structure' of the purines/pyrimidines distribution in DNA distinguishes systematically between coding and non-coding sequences (1997) Bulletin of Mathematical Biology, 59 (5), pp. 975-992.
  13. Provata, A., Prassas, V.D., Theodorou, D.N. Surface tension and phase coexistence properties of the lattice fluid from a virtual site removal Monte Carlo strategy (1997) Journal of Chemical Physics, 107 (13), pp. 5125-5140.
  14. Provata, A., Almirantis, Y. Scaling properties of coding and non-coding DNA sequences (1997) Physica A: Statistical Mechanics and its Applications, 247 (1-4), pp. 482-496.
  15. Tretyakov, A.Yu., Provata, A. Steady State Behavior of Trimolecular Reaction a + 2X ⇌ 3X on a Square Lattice (1998) Journal of the Physical Society of Japan, 67 (2), pp. 430-433.
  16. Provata, A., Trohidou, K.N. Spatial distribution and fractal properties of aggregating magnetic and non-magnetic particles (1998) Fractals, 6 (3), pp. 219-230.
  17. Provata, A., Falaras, P., Xagas, A. Fractal features of titanium oxide surfaces (1998) Chemical Physics Letters, 297 (5-6), pp. 484-490.
  18. Provata, A. Random aggregation models for the formation and evolution of coding and non-coding DNA (1999) Physica A: Statistical Mechanics and its Applications, 264 (3-4), pp. 570-580.
  19. Provata, A.; Nicolis, G.; Baras, F. Oscillatory dynamics in low-dimensional supports: A lattice Lotka-Volterra model (1999) Journal of Chemical Physics, 110 (17), pp. 8361-8368.
  20. Almirantis, Y., Provata, A. Long-and short-range correlations in Genome organization (1999) Journal of Statistical Physics, 97 (1-2), pp. 233-262.
  21. Provata, A., Almirantis, Y. Fractal cantor patterns in the sequence structure of DNA (2000) Fractals, 8 (1), pp. 15-27.
  22. Rabias, I., Howlin, B.J., Provata, A., Theodorou, D. Modelling of structural and vibrational properties of poly(p-phenylene) and polypyrrole using molecular orbital methods (2000) Molecular Simulation, 24 (1-3), pp. 95-109.
Last Updated on Monday, 07 September 2009 10:30